{"id":63,"date":"2021-03-11T17:27:19","date_gmt":"2021-03-11T17:27:19","guid":{"rendered":"https:\/\/auremol.de\/?page_id=63"},"modified":"2024-10-27T11:50:09","modified_gmt":"2024-10-27T11:50:09","slug":"downloads","status":"publish","type":"page","link":"https:\/\/auremol.de\/?page_id=63","title":{"rendered":"Downloads"},"content":{"rendered":"<p><code><\/code><\/p>\n<h1>AUREMOL Version 2.5.1<\/h1>\n<p>This time limited software version is\u00a0<strong>free of charge<\/strong>\u00a0(100 days after installation, no additional license required).<strong><br \/>\n<\/strong>Permanent licenses can be obtained from <strong>Kalbitzer Innovations UG<\/strong> (kalbitzer-innovations@t-online.de).<\/p>\n<p>The actual version (64 bit) is running under Windows 10.<\/p>\n<p>When using the program please cite this site and\/or<\/p>\n<p>Gronwald, W. and Kalbitzer, H. R. (2004) <strong>Automated Structure Determination of Proteins by NMR Spectroscopy.<\/strong> Progr. NMR Spectr. 44, 33-96.<\/p>\n<p>For citing specific methods see <strong>Programs.<\/strong><\/p>\n<p><a role=\"button\" href=\"https:\/\/auremol.de\/Setup_Auremol_2.4.2_BETA.exe\"><code><p id=\"simple-download-counter-667\" class=\"simple-download-counter\"><a class=\"simple-download-counter-link\" href=\"https:\/\/auremol.de?sdc_download=667&#038;key=v1ey00z1p11v9tbwchaup8k77k36y7\" title=\"744 downloads\">Download Auremol<\/a><\/p><\/code><\/a><\/p>\n<h1>PERMOL+<\/h1>\n<p>The program PERMOL+ for homology modelling of protein-protein and protein-ligand complexes. It is part of AUREMOL 2.5.1 but exists also as stand-alone version. It can be downloaded <strong>free of charge<\/strong>. Version running on Windows 10 or Mac OS are provided<\/p>\n<p>When using the program please cite this site and M\u00f6glich, A., Weinfurtner, D., Maurer, T., Gronwald, W., Kalbitzer, H. R. (2005b) <strong>A restraint molecular dynamics and simulated annealing approach for protein homology modeling utilizing mean angles.<\/strong> <em>BMC Bioinformatics,<\/em> 6:91. Additional references see <strong>Programs<\/strong>.<a role=\"button\" href=\"https:\/\/auremol.de\/permol\/sicher\/index.html\"><br \/>\n<code><p id=\"simple-download-counter-671\" class=\"simple-download-counter\"><a class=\"simple-download-counter-link\" href=\"https:\/\/auremol.de?sdc_download=671&#038;key=2k9ccdvh053myeg63ej97ezgefkul5\" title=\"727 downloads\">Download Permol<\/a><\/p><\/code><\/a><\/p>\n<h1>UACSB<\/h1>\n<p>The unbiased artificial chemical shift data base (<strong>UACSB<\/strong>) was recalculated from the unbiased protein structural data base NH3D (Sillitoe et al., 2013). In the actual version, the chemical shift distributions of calculated from this database can be downloaded as pdf. A stand-alone version is actually not available.<\/p>\n<div class=\"dropdown\">\r\n<select id=\"shifts\">\r\n  <option value=\"SHIFTS\">SHIFTS<\/option>\r\n  <option value=\"SHIFTX2\">SHIFTX2<\/option>\r\n<\/select>\r\n<select id=\"aminoacids\">\r\n<\/select>\r\n<select id=\"atoms\">\r\n<\/select>\r\n<p>\r\n<button onclick=\"selectUACSB();\" class=\"dropbtn\" id=\"testbutton\">Show<\/button>\r\n<p><\/p>\r\n<img src = \"https:\/\/kalbitzer-innovations.de\/UACSB\/ALA-C.png\" id =\"pic\" alt=\"invald combination\">\r\n\t<p>\r\n<a id=\"downloadLink\" href=\"https:\/\/kalbitzer-innovations.de\/UACSB\/ALA-C.pdf\" target=\u201d_blank\u201d>Download SHIFTS chemical shift distribution of ALA-C<\/a>\r\n<\/div>\r\n<style>\r\n\t.dropdownyxcyxc {\r\n\t\tposition: center\r\n\t}\r\n\t.centeredcenterr{\r\n\t\tmargin: 0 auto;\r\n<\/style>\r\n\n<script>\r\n(function () {\r\n\tvar aminoacids = document.getElementById(\"aminoacids\");\r\n\tvar atoms = document.getElementById(\"atoms\");\r\n\tvar optionsAC = [\"ALA\", \"ARG\", \"ASN\", \"ASP\", \"CYS\", \"GLN\", \"GLU\", \"GLY\", \"HIS\", \"ILE\", \"LEU\", \"LYS\", \"MET\", \"PHE\", \"PRO\", \"SER\", \"THR\", \"TRP\", \"TYR\", \"VAL\"];\r\n\tcreateDropdowns(aminoacids, optionsAC);\r\n\tvar optionsAtoms = [\"C\", \"CA\", \"CB\", \"CD\", \"CD1\", \"CD2\", \"CE\", \"CE1\", \"CE2\", \"CE3\", \"CG\", \"CG1\", \"CG2\", \"CH2\", \"CZ\", \"CZ2\", \"CZ3\", \"HA\", \"HA2\", \"HA3\", \"HB\", \"HB1\", \"HB2\", \"HB3\", \"HD1\", \"HD11\", \"HD12\", \"HD13\", \"HD2\", \"HD21\", \"HD22\", \"HD23\", \"HD3\", \"HE\", \"HE1\", \"HE2\", \"HE21\", \"HE22\", \"HE3\", \"HG\", \"HG1\", \"HG11\", \"HG12\", \"HG13\", \"HG2\", \"HG21\", \"HG22\", \"HG23\", \"HG3\", \"HH\", \"HH11\", \"HH12\", \"HH2\", \"HH21\", \"HH22\", \"HN\", \"HZ\", \"HZ1\", \"HZ2\", \"HZ3\", \"N\", \"ND1\", \"ND2\", \"NE\", \"NE1\", \"NE2\", \"NH1\", \"NH2\", \"NZ\"];\r\n\tcreateDropdowns(atoms, optionsAtoms)\r\n})();\r\n\r\nfunction selectUACSB() {\r\n\r\n\tvar shifts = document.getElementById(\"shifts\");\r\n\tvar aminoacids = document.getElementById(\"aminoacids\");\r\n\tvar atoms = document.getElementById(\"atoms\");\r\n\tvar downloadLink = document.getElementById(\"downloadLink\");\r\n\r\n\tvar text = shifts.options[shifts.selectedIndex].text;\r\n\t\tvar pic = document.getElementById(\"pic\");\r\n\r\n\tvar shift = \"\"\r\n\tif (shifts.value === \"SHIFTX2\") {\r\n\t\tshift = \"SHIFTX2\/\"\r\n\t}\r\n\tvar aminoacidString = aminoacids.value;\r\n\tvar atomString = atoms.value;\r\n\tvar link = \"https:\/\/kalbitzer-innovations.de\/UACSB\/\".concat(shift, aminoacidString, \"-\", atomString);\r\n\tvar linkPic = link.concat(\".png\");\r\n\tvar linkPDF = link.concat(\".pdf\");\r\n\tconsole.log(linkPic);\r\n\tpic.src = linkPic;\r\n\tdownloadLink.href = linkPDF;\r\n\tdownloadLink.text = \"Download \"+shifts.value+ \" chemical shift distribution of \"+ aminoacidString + \"-\" + atomString;\r\n\tpic.onerror = function() {downloadLink.text = \"\"}\r\n\r\n\tvar optionsAC = [\"ALA\", \"ARG\", \"ASN\", \"ASP\", \"CYS\", \"GLN\", \"GLU\", \"GLY\", \"HIS\", \"ILE\", \"LEU\", \"LYS\", \"MET\", \"PHE\", \"PRO\", \"SER\", \"THR\", \"TRP\", \"TYR\", \"VAL\"];\r\n\tcreateDropdowns(aminoacids, optionsAC);\r\n\tvar optionsAtoms = [\"C\", \"CA\", \"CB\", \"CD\", \"CD1\", \"CD2\", \"CE\", \"CE1\", \"CE2\", \"CE3\", \"CG\", \"CG1\", \"CG2\", \"CH2\", \"CZ\", \"CZ2\", \"CZ3\", \"HA\", \"HA2\", \"HA3\", \"HB\", \"HB1\", \"HB2\", \"HB3\", \"HD1\", \"HD11\", \"HD12\", \"HD13\", \"HD2\", \"HD21\", \"HD22\", \"HD23\", \"HD3\", \"HE\", \"HE1\", \"HE2\", \"HE21\", \"HE22\", \"HE3\", \"HG\", \"HG1\", \"HG11\", \"HG12\", \"HG13\", \"HG2\", \"HG21\", \"HG22\", \"HG23\", \"HG3\", \"HH\", \"HH11\", \"HH12\", \"HH2\", \"HH21\", \"HH22\", \"HN\", \"HZ\", \"HZ1\", \"HZ2\", \"HZ3\", \"N\", \"ND1\", \"ND2\", \"NE\", \"NE1\", \"NE2\", \"NH1\", \"NH2\", \"NZ\"];\r\n\tcreateDropdowns(atoms, optionsAtoms)\r\n}\r\nfunction createDropdowns(dropdown, options) {\r\n\r\n\tfor (var i = 0; i < options.length; i++) {\r\n\t\tvar opt = options[i];\r\n\r\n\t\tvar el = document.createElement(\"option\");\r\n\t\tel.text = opt;\r\n\t\tel.value = opt;\r\n\r\n\t\tdropdown.add(el);\r\n\t}\r\n}\r\n<\/script>\n<h1>IndirectRef<\/h1>\n<p><strong>IndirectRef<\/strong> is a html-program for indirect referencing of heteronuclear NMR-spectra. It can be downloaded free of charge. When using the program please cite this site as well as the references given on the page <strong>Programs (IndirectRef).<\/strong><\/p>\n<p><code><p id=\"simple-download-counter-697\" class=\"simple-download-counter\"><a class=\"simple-download-counter-link\" href=\"https:\/\/auremol.de?sdc_download=697&#038;key=tnibduxha178m8sphvubfu2ze5hg7e\" title=\"704 downloads\">Download IndirectRef<\/a><\/p><\/code><\/p>\n","protected":false},"excerpt":{"rendered":"<p>AUREMOL Version 2.5.1 This time limited software version is\u00a0free of<span class=\"more-button\"><a href=\"https:\/\/auremol.de\/?page_id=63\" class=\"more-link\">Continue reading<span class=\"screen-reader-text\">Downloads<\/span><\/a><\/span><\/p>\n","protected":false},"author":1,"featured_media":0,"parent":0,"menu_order":0,"comment_status":"closed","ping_status":"closed","template":"","meta":[],"_links":{"self":[{"href":"https:\/\/auremol.de\/index.php?rest_route=\/wp\/v2\/pages\/63"}],"collection":[{"href":"https:\/\/auremol.de\/index.php?rest_route=\/wp\/v2\/pages"}],"about":[{"href":"https:\/\/auremol.de\/index.php?rest_route=\/wp\/v2\/types\/page"}],"author":[{"embeddable":true,"href":"https:\/\/auremol.de\/index.php?rest_route=\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/auremol.de\/index.php?rest_route=%2Fwp%2Fv2%2Fcomments&post=63"}],"version-history":[{"count":14,"href":"https:\/\/auremol.de\/index.php?rest_route=\/wp\/v2\/pages\/63\/revisions"}],"predecessor-version":[{"id":709,"href":"https:\/\/auremol.de\/index.php?rest_route=\/wp\/v2\/pages\/63\/revisions\/709"}],"wp:attachment":[{"href":"https:\/\/auremol.de\/index.php?rest_route=%2Fwp%2Fv2%2Fmedia&parent=63"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}